Difference between revisions of "Files & Formats"
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− | Neuroelectrics devices generate a series of files and formats. Proprietary ones are in bold: | + | ==Neuroelectrics devices generate a series of files and formats. Proprietary ones are in bold:== |
− | - The '''.''easy''''' data format (ASCII, plain text) | + | - The '''.''easy''''' data format (ASCII, plain text) (Enobio & Starstim) |
− | - The '''.''info''''' file (ASCII, plain text) | + | - The '''.''info''''' file (ASCII, plain text) (Enobio & Starstim) |
− | - The | + | - The '''.''sdeeg''''' SD card data format (binary) (Enobio & Starstim) |
− | - The '''.'' | + | - The '''.''.nedf''''' (binary) data format (Enobio & Starstim) |
− | |||
− | In general, time keeping is given with time stamps per sample in ms since Jan 1st 1970 ([http://en.wikipedia.org/wiki/Unix_time | + | In general, time keeping is given with time stamps per sample in ms since Jan 1st 1970 ([http://en.wikipedia.org/wiki/Unix_time Unix time]). |
− | |||
− | |||
− | |||
+ | = Neuroelectrics generated files = | ||
+ | Neuroelectrics devices generate specific files as well as EEG data for Enobio devices. | ||
== the .'''info''' file associated with a stimulation session == | == the .'''info''' file associated with a stimulation session == | ||
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Additional channel status:OFF | Additional channel status:OFF | ||
Number of records of Stimulation: 46 (1 second/record) | Number of records of Stimulation: 46 (1 second/record) | ||
− | Total number of channels: 8 | + | |
+ | Total number of channels: 8 | ||
Number of EEG channels: 6 | Number of EEG channels: 6 | ||
Number of stimulation channels: 1 | Number of stimulation channels: 1 | ||
Line 32: | Line 31: | ||
Shamp ramp duration (s): OFF | Shamp ramp duration (s): OFF | ||
Stimulation duration (s): 1200 | Stimulation duration (s): 1200 | ||
− | Type of stimulation: tACS | + | Type of stimulation: tACS |
+ | |||
Stimulation parameters: | Stimulation parameters: | ||
Channel 1: | Channel 1: | ||
Position: C3 | Position: C3 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Channel 2: | Channel 2: | ||
Position: C4 | Position: C4 | ||
Line 43: | Line 44: | ||
Offset (uA): 0 | Offset (uA): 0 | ||
Frequency (Hz): 10 | Frequency (Hz): 10 | ||
+ | |||
Channel 3: | Channel 3: | ||
Position: Ch3 | Position: Ch3 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Channel 4: | Channel 4: | ||
Position: Ch4 | Position: Ch4 | ||
Type: Return | Type: Return | ||
Percentage return: 100% | Percentage return: 100% | ||
+ | |||
Channel 5: | Channel 5: | ||
Position: Ch5 | Position: Ch5 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Channel 6: | Channel 6: | ||
Position: Ch6 | Position: Ch6 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Channel 7: | Channel 7: | ||
Position: Ch7 | Position: Ch7 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Channel 8: | Channel 8: | ||
Position: Ch8 | Position: Ch8 | ||
Type: EEG Recording | Type: EEG Recording | ||
+ | |||
Trigger information: | Trigger information: | ||
Code Description | Code Description | ||
Line 73: | Line 81: | ||
8 | 8 | ||
9 | 9 | ||
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= EEG data files and formats = | = EEG data files and formats = | ||
Line 102: | Line 101: | ||
EEG sampling rate: 500 Samples/second | EEG sampling rate: 500 Samples/second | ||
EEG units: nV | EEG units: nV | ||
+ | |||
EEG montage: | EEG montage: | ||
Channel 1: P7 | Channel 1: P7 | ||
Line 123: | Line 123: | ||
Channel 19: F7 | Channel 19: F7 | ||
Channel 20: EXT | Channel 20: EXT | ||
+ | |||
Number of records of Accelerometer: 30 (1 second/record) | Number of records of Accelerometer: 30 (1 second/record) | ||
Number of channels of Accelerometer: 3 | Number of channels of Accelerometer: 3 | ||
Accelerometer sampling rate: 100 Samples/second | Accelerometer sampling rate: 100 Samples/second | ||
Accelerometer units: mm/s^2 | Accelerometer units: mm/s^2 | ||
+ | |||
Trigger information: | Trigger information: | ||
Code Description | Code Description | ||
Line 141: | Line 143: | ||
== The .'''easy''' data format (ASCII) == | == The .'''easy''' data format (ASCII) == | ||
ABOUT THE NE ASCII DATA FORMAT (July 2012): | ABOUT THE NE ASCII DATA FORMAT (July 2012): | ||
− | NE ASCII files contain one line per time sample. Each line contains | + | NE ASCII files contain one line per time sample (Sampling rate: 500 SPS). Each line contains first the EEG data (8,20 or 32 |
− | + | channels, depending on the device, with units in nV), followed by three acceleration channels (aX,aY,aZ in mm/s^2- | |
− | + | millimeters per second squared), a trigger flag (int32) and, finally, a timestamp in | |
− | + | Unix time (ms from Jan 1 1970): | |
− | |||
− | |||
− | Ch1(nV) ... | + | Ch1(nV) ... Ch8,20or32(nV) aX(mg) aY(mg) aZ(mg) AddSensor Flags(int32) TimeStamp (ms) |
− | Therefore Enobio8/ | + | Therefore Enobio8/StarStim8 will have a minimum of 8+4 (12) columns + timestamp |
− | |||
− | Enobio8 | + | Enobio8: 8 columns (EEG data) + 3 acceleration channels + trigger column + timestamp |
− | + | ||
− | + | Enobio20: 20 columns (EEG data) + 3 acceleration channels + trigger column + timestamp | |
− | + | ||
− | + | Enobio 32: 32 columns (EEG data) + 3 acceleration channels + trigger column + timestamp | |
− | + | ||
− | + | Starstim 8: 8 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp | |
− | + | ||
− | + | Starstim 20: 20 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp | |
− | + | ||
− | + | Starstim 32: 32 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp | |
− | + | ||
− | + | ||
− | + | [Note: the accelerometer uses 13 bits for a range of +/- 16g, thus 3.9 mg/LSB] | |
− | + | ||
− | + | ||
− | + | Here is an example from a StarStim device (8 Channels) where the first 2 channels are used for stimulation (with "-1"s), and with accelerometer data (3 columns), markers (with a marker sent (5) in the last sample) and timestamp: | |
+ | |||
+ | -1 -1 8999110 29602960 27793792 19921829 -3670597 18110801 -2745 9561 -912 0 1353011252736 | ||
+ | -1 -1 8902360 29539254 27764085 19818737 -3924179 18143797 -2745 9561 -912 0 1353011252738 | ||
+ | -1 -1 8827496 29457477 27727511 19748117 -4140377 18101551 -2745 9561 -912 0 1353011252740 | ||
+ | -1 -1 8779812 29376462 27720311 19705727 -4315472 18054868 -2745 9561 -912 5 1353011252742 <-- Reception of the marker #5 | ||
+ | |||
+ | Here is an example from a StarStim device (8 Channels) using all the channels to record EEG, and with accelerometer data (3 columns), markers and timestamp: | ||
+ | |||
+ | 899394 182343 8999110 29602960 27793792 19921829 -3670597 18110801 -2745 9561 -912 0 1353011252736 | ||
+ | 197056 789249 8902360 29539254 27764085 19818737 -3924179 18143799 -2745 9561 -912 0 1353011252738 | ||
+ | 198187 237426 8827496 29457477 27727511 19748117 -4140377 18101551 -2745 9561 -912 0 1353011252740 | ||
+ | 772031 389240 8779812 29376462 27720311 19705727 -4315472 18054868 -2745 9561 -912 0 1353011252742 | ||
+ | |||
+ | |||
+ | Regarding the 3D image of the accelerometer, here the image of an Enobio 8-channels or a Starstim 8-channels: | ||
+ | |||
+ | [[File:Accelerometer device.PNG|600px]] | ||
== The .'''edf''' (binary, EDF+) data format == | == The .'''edf''' (binary, EDF+) data format == | ||
This is the standard [http://www.edfplus.info/specs/edf.html | EDF data format]. Files in this format can be opened from EDF data readers. | This is the standard [http://www.edfplus.info/specs/edf.html | EDF data format]. Files in this format can be opened from EDF data readers. | ||
+ | The EDF+ format has only 16 bits of quantization. To avoid any distortion of the signal the EDF+ files are pre-processed including: | ||
+ | |||
+ | - High pass filtering of the signal at 0.1 Hz | ||
== The .'''nedf''' (binary) data format == | == The .'''nedf''' (binary) data format == | ||
− | This is Neuroelectrics proprietary data format. It is lossless (full 24 bit) binary. It can be opened by NIC Offline. | + | This is Neuroelectrics proprietary data format (NEDF). It is lossless (full 24 bit) binary. It can be opened by NIC Offline and exported/saved into any of the other NE formats. |
− | |||
− | = The '''.sdeeg''' SD card data = | + | == The '''.sdeeg''' SD card data == |
− | This is another proprietary, binary data format. It can be opened with NIC Offline software. | + | This is another proprietary, binary data format. It can be opened with NIC Offline software and exported/saved into any of the other NE formats. |
Latest revision as of 08:38, 29 August 2018
Contents
Neuroelectrics devices generate a series of files and formats. Proprietary ones are in bold:
- The .easy data format (ASCII, plain text) (Enobio & Starstim) - The .info file (ASCII, plain text) (Enobio & Starstim) - The .sdeeg SD card data format (binary) (Enobio & Starstim) - The ..nedf (binary) data format (Enobio & Starstim)
In general, time keeping is given with time stamps per sample in ms since Jan 1st 1970 (Unix time).
Neuroelectrics generated files
Neuroelectrics devices generate specific files as well as EEG data for Enobio devices.
the .info file associated with a stimulation session
Here is an example of the ASCII data file associated to a stimulation session. The name of the file would be something like '20130220112635_Patient01.info:
StartDate (first EEG timestamp): 1361377909087 Device class: StarStim Device Mac: 00:07:80:58:9C:1A NIC version: v1.1.9 Firmware version: 699 Line filter status: OFF Additional channel status:OFF Number of records of Stimulation: 46 (1 second/record)
Total number of channels: 8
Number of EEG channels: 6 Number of stimulation channels: 1 Stimulation sampling rate: 500 Samples/second Stimulation units: uA Ramp up duration (s): 15 Ramp down duration (s): 15 Shamp ramp duration (s): OFF Stimulation duration (s): 1200 Type of stimulation: tACS
Stimulation parameters: Channel 1: Position: C3 Type: EEG Recording
Channel 2: Position: C4 Type: Stimulation Anodal Amplitude (uA): 100 Offset (uA): 0 Frequency (Hz): 10
Channel 3: Position: Ch3 Type: EEG Recording
Channel 4: Position: Ch4 Type: Return Percentage return: 100%
Channel 5: Position: Ch5 Type: EEG Recording
Channel 6: Position: Ch6 Type: EEG Recording
Channel 7: Position: Ch7 Type: EEG Recording
Channel 8: Position: Ch8 Type: EEG Recording
Trigger information: Code Description 1 Subject moved 2 Eyes opened 3 Eyes closed 4 sleeping 5 EEG signals are noisy 6 7 8 9
EEG data files and formats
the .info file associated with an EEG only session
Here is an example of what this plain text file contains. The name of the file would be something like '20131011141257_demo.info:
StartDate (first EEG timestamp): 1381493577260 Device class: Enobio20 Device MAC: 00:07:80:63:F0:CD NIC version: v1.2.9 Firmware version: 699 Line filter status: 60 Hz Additional channel status: OFF Total number of channels: 20 Number of EEG channels: 20 Number of records of EEG: 15381 Number of packets lost: 0(0.00%) EEG sampling rate: 500 Samples/second EEG units: nV
EEG montage: Channel 1: P7 Channel 2: P4 Channel 3: Cz Channel 4: Pz Channel 5: P3 Channel 6: P8 Channel 7: O1 Channel 8: O2 Channel 9: T8 Channel 10: F8 Channel 11: C4 Channel 12: F4 Channel 13: Fp2 Channel 14: Fz Channel 15: C3 Channel 16: F3 Channel 17: Fp1 Channel 18: T7 Channel 19: F7 Channel 20: EXT
Number of records of Accelerometer: 30 (1 second/record) Number of channels of Accelerometer: 3 Accelerometer sampling rate: 100 Samples/second Accelerometer units: mm/s^2
Trigger information: Code Description 1 EventA 2 EventB 3 Movement 4 Eyeblink 5 6 7 8 9
The .easy data format (ASCII)
ABOUT THE NE ASCII DATA FORMAT (July 2012): NE ASCII files contain one line per time sample (Sampling rate: 500 SPS). Each line contains first the EEG data (8,20 or 32 channels, depending on the device, with units in nV), followed by three acceleration channels (aX,aY,aZ in mm/s^2- millimeters per second squared), a trigger flag (int32) and, finally, a timestamp in Unix time (ms from Jan 1 1970): Ch1(nV) ... Ch8,20or32(nV) aX(mg) aY(mg) aZ(mg) AddSensor Flags(int32) TimeStamp (ms) Therefore Enobio8/StarStim8 will have a minimum of 8+4 (12) columns + timestamp Enobio8: 8 columns (EEG data) + 3 acceleration channels + trigger column + timestamp Enobio20: 20 columns (EEG data) + 3 acceleration channels + trigger column + timestamp
Enobio 32: 32 columns (EEG data) + 3 acceleration channels + trigger column + timestamp
Starstim 8: 8 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp
Starstim 20: 20 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp
Starstim 32: 32 columns (EEG data or not used channel to record EEG) + 3 acceleration channels + trigger column + timestamp
[Note: the accelerometer uses 13 bits for a range of +/- 16g, thus 3.9 mg/LSB]
Here is an example from a StarStim device (8 Channels) where the first 2 channels are used for stimulation (with "-1"s), and with accelerometer data (3 columns), markers (with a marker sent (5) in the last sample) and timestamp:
-1 -1 8999110 29602960 27793792 19921829 -3670597 18110801 -2745 9561 -912 0 1353011252736 -1 -1 8902360 29539254 27764085 19818737 -3924179 18143797 -2745 9561 -912 0 1353011252738 -1 -1 8827496 29457477 27727511 19748117 -4140377 18101551 -2745 9561 -912 0 1353011252740 -1 -1 8779812 29376462 27720311 19705727 -4315472 18054868 -2745 9561 -912 5 1353011252742 <-- Reception of the marker #5
Here is an example from a StarStim device (8 Channels) using all the channels to record EEG, and with accelerometer data (3 columns), markers and timestamp:
899394 182343 8999110 29602960 27793792 19921829 -3670597 18110801 -2745 9561 -912 0 1353011252736 197056 789249 8902360 29539254 27764085 19818737 -3924179 18143799 -2745 9561 -912 0 1353011252738 198187 237426 8827496 29457477 27727511 19748117 -4140377 18101551 -2745 9561 -912 0 1353011252740 772031 389240 8779812 29376462 27720311 19705727 -4315472 18054868 -2745 9561 -912 0 1353011252742
Regarding the 3D image of the accelerometer, here the image of an Enobio 8-channels or a Starstim 8-channels:
The .edf (binary, EDF+) data format
This is the standard | EDF data format. Files in this format can be opened from EDF data readers. The EDF+ format has only 16 bits of quantization. To avoid any distortion of the signal the EDF+ files are pre-processed including:
- High pass filtering of the signal at 0.1 Hz
The .nedf (binary) data format
This is Neuroelectrics proprietary data format (NEDF). It is lossless (full 24 bit) binary. It can be opened by NIC Offline and exported/saved into any of the other NE formats.
The .sdeeg SD card data
This is another proprietary, binary data format. It can be opened with NIC Offline software and exported/saved into any of the other NE formats.